Input data

Paste your FASTA sequence here
>AF016992 CAGTAGTAACATGTTTCTGGTCATCGGCGCAATCCTGGCCAGCGCCCTCTTCGTGGGCCT GCTGCTCTACCATCTAAAGTTCAAGCGGCTGATTGACCTCATCAGCTACATGCCGGGTCC TCCCGTGCTGCCGCTGGTCGGCCATGGCCACCACTTCATCGGCAAGCCGCCGCACGAGAT GGTCAAGAAGATTTTCGAGTTCATGGAGACCTACTCCAAGGACCAGGTGCTCAAGGTGTG GCTGGGACCCGAGCTGAACGTGCTCATGGGCAACCCCAAGGACGTCGAGGTCGTCCTGGG CACGTTGCGCTTCAACGACAAGGCGGGTGAATATAAGGCCCTAGAGCCGTGGCTAAAGGA GGGTCTGCTGGTCAGTCGCGGTCGGAAGTGGCACAAGCGACGCAAGATTATCACGCCCGC CTTCCACTTTAAGATCCTCGACCAGTTCGTTGAGGTCTTCGAGAAGGGGTCGCGAGATCT GCTCCGGAATATGGAGCAGGATCGCCTGAAGCACGGCGAATCCGGCTTTAGCCTCTACGA CTGGATCAATCTCTGCACCATGGACACGATCTGCGGTAGGGATCTAGGTCTTTAATTTTT ATCATCTAGCAAATGGTGGTGCTTTGGAGAATGGGCTCTTGGTGTGGCCTGAGTAAGGCC ATAGTATCTATTTGTAAAAGCTTTGATAGCATTCCTTTTCCTATTCCAGAAACTGCCATG GGTGTTTCCATCAATGCGCAGTCGAATGCAGACTCCGAGTACGTCCAGGCGGTGAAGACC ATATCGATGGTGCTGCACAAGCGGATGTTCAACATTCTGTACCGCTTCGACCTTACCTAC ATGCTGACCCCACTGGCGAGGGCGGAGAAGAAGGCCCTGAACGTGCTTCACCAGTTCACA GAGAAGATCATCGTGCAGCGCAGGGAGGAGCTCATCCGCGAAGGAAGCAGCCAGGAGAGC AGCAATGATGACGCCGACGTGGGCGCCAAGAGAAAGATGGCCTTCCTGGACATCCTTCTG CAGTCGACCGTCGACGAACGGCCCCTGAGCAACTTGGACATTCGCGAGGAAGTGGACACC TTCATGTTCGAGGGCCACGACACCACCTCTTCGGCCCTGATGTTCTTCTTCTACAACATA GCCACCCACCCGGAGGCGCAGAAGAAGTGCTTTGAGGAGATCCGGTCCGTGGTGGGCAAT GACAAGAGCACGCCGGTGAGCTATGAGCTGCTGAACCAGCTGCACTACGTCGACCTGTGC GTGAAGGAGACCCTTCGAATGTATCCGTCTGTACCGCTGCTGGGTCGTAAGGTTCTCGAG GACTGCGAGATCAGTGAGTACAGTGCGTAGAGGAGTAAAGTACTCAATTTTAACTTGCCT TTCCCCAATGCAGATGGAAAGCTCATCCCGGCGGGCACGAATATCGGCATCTCCCCCCTC TACTTGGGCAGACGGGAGGAGCTCTTTAGCGAGCCCAATAGCTTCAAGCCGGAACGGTTC GATGTGGTCACCACCGCCGAGAAGCTGAATCCGTACGCGTACATTCCGTTCTCGGCCGGA CCTCGCAACTGCATTGGCCAGAAGTTCGCCATGCTGGAGATCAAGGCCATCGTGGCCAAT GTGCTCCGGCACTACGAGGTTGACTTTGTGGGCGACTCCTCGGAACCACCCGTGCTGATC GCCGAACTTATTCTGCGTACCAAGGAACCCTTGATGTTCAAGGTGCGGGAGCGAGTCTAC TGAACCACAACATCGCATTATATCTTTACGCTTGTCAATTAAAATATATTCAAAAATGTG AACGATTGGCGGCAAAGTCTTTGCTTTGAGTGAAGGCCGAACAGTAAGGTCATGGTCACA CTGGCTTAGGGAA

... or search a FASTA file to process

Paste your GFF evidences here (Field separator: tab)
# Experimental evidences found in the sequence AF016992 AF016992 geneid_v1.1 Single 11 595 . + 0 AF016992 geneid_exons Terminal 1836 1869 . + 0

... or search a GFF file containing evidences to process

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Prediction Options

Organism: Homo sapiens. Drosophila melanogaster. Tetraodon nigroviridis. Dictyostelium discoideum.

Prediction modes: Normal mode (signal, exon and gene prediction). Exon mode (only signals and exons, omitting evidences). Assembling mode (only assembling evidences). DNA strands: Forward and Reverse. Forward. Reverse.

Output options

Output format:

geneid GFF geneid including CDS sequence geneid extended (only genes) GFF extended (only genes)

Elements to be included in the output:

About geneid server

geneid ^server is the web server to geneid, a program to predict genes, exons, splice sites and other signals along a DNA sequence. Visit geneid homepage for more information about this program.

Authors and acknowledgements

Version 1 of geneid has been mostly written by Enrique Blanco and Roderic Guigo.
Profiles and Markov matrices have been computed by Genis Parra.
geneid ^server written by Enrique Blanco with the always useful help of Moises Burset and Josep F. Abril.