<H16>    Elements of Programming with Perl

 

Objectives:

To provide the level of programming in Perl required for the development of bioinformatic techniques.

 

H16 - 1		Introduction to Perl Lecture:  PDF handout Scripts:  myfirstscript
H16 - 2/3		Variables and Control Structures Lecture:  PDF handout
H16 - 4/5		Scalar Variables and Operators Lecture:  PDF handout Scripts:  sum_integers    calc_mean    sequence_content
H16 - 6/7		Arrays: Vectors and Matrices Lecture:  PDF handout Scripts:  sequence_content_strings    sequence_content_arrays    sequence_content_benchmark    sequence_content_multibenchmark Results:  sequence_content_multibenchmark    seq_content_benchmark_short    multibenchmark_short.R    multibenchmark_short.png    multibenchmark_short_zoom.png
H16 - 8/9		Hashes: Working with Dictionaries Lecture:   Scripts:  translate_draft    translate_v1    translate_v2
H16 - 10/11		Filehandles: Accessing to Data Streams Lecture:   Scripts:  dotplot_draft    dotplot_v1 Data sets:  short_seqs.fa
H16 - 12/13		Regular Expressions: Pattern Matching and Substitution Lecture:  PDF handout Scripts:  regexp_tester
H16 - 14/15		Reusing Code: Functions and Modules Lecture:  PDF handout Scripts:  seq_analysis    seq_analysis_subs    seq_analysis_modules Modules:  sequence_analysis.pm Data sets:  single_seq.fa

 

 

Josep F. Abril © 2004/2005