| PrintExons.c | geneid v 1.1 source documentation |
| Description: |
|
Output predicted exons, selecting the proper format according to the
setup options and whether the exon is part of a gene (gff/xml/geneid)
or not (gff/geneid).
|
| Briefing: |
void PrintExon(exonGFF *e, char Name[], char* s, dict* dAA) |
|
Print a exon, previously translated into amino acids, using the proper
output format taking into account the positions plus offsets (corrections),
if exon is not an annotation.
|
void PrintExons (exonGFF *e,
long ne,
int type,
char Name[],
long l1, long l2,
char* Sequence,
dict* dAA)
|
|
Print a list of exons by using the proper output format.
|
void PrintGExon(exonGFF *e,
char Name[],
char* s,
dict* dAA,
long ngen,
int AA1,
int AA2,
int nAA)
|
|
Print an exon which is part of a gene (identifer, amino acid positions) in
gff/geneid format. For annotations, type field is different.
|
void PrintXMLExon(exonGFF *e,
char Name[],
long ngen,
long nExon,
int type1,
int type2,
int nExons)
|
|
Print an exon which is part of a gene by using the XML format.
|
Enrique Blanco Garcia © 2001