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CHROMOSOME 2 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 5H6 |
SGP.chr2_75 |
7041989 - 7089985 FWD |
297bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12C2 |
TS.chr2.12.024 |
11898306 - 11911576 REV |
408bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 4A5 |
TS.chr2.16.011 |
15813759 - 15834720 FWD |
1068bp / 6 |
4 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 12E2 |
TS.chr2.16.013 |
15994687 - 15998543 FWD |
574bp / 3 |
2 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 4A6 |
TS.chr2.17.001 |
16041294 - 16061823 FWD |
471bp / 4 |
2 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 4B1 |
TS.chr2.17.003 |
16230158 - 16240852 FWD |
282bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12F2 |
TS.chr2.23.010 |
22822089 - 22829039 FWD |
381bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 5H5 |
SGP.chr2_343 |
25949015 - 25969431 FWD |
831bp / 8 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4B2 |
TS.chr2.30.014 |
29292704 - 29302243 REV |
264bp / 4 |
2 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 4B3 |
TS.chr2.31.002 |
30082540 - 30088346 REV |
717bp / 5 |
4 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 4B4 |
TS.chr2.33.023 |
32632539 - 32635264 REV |
267bp / 3 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 1E1 |
SGP.chr2_620 |
36309321 - 36481772 REV |
2832bp / 13 |
7 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 8C5 |
SGP.chr2_678 |
38304773 - 38325726 FWD |
576bp / 3 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
| 9E3 |
SGP.chr2_748 |
44453728 - 44479497 FWD |
579bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8C6 |
SGP.chr2_748 |
44453728 - 44479497 FWD |
579bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6A1 |
SGP.chr2_856 |
49072039 - 49151590 FWD |
570bp / 6 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8D1 |
SGP.chr2_961 |
57185994 - 57246851 REV |
420bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7H1 |
TS.chr2.61.005 |
60113782 - 60118018 REV |
405bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
| 6H2 |
SGP.chr2_1090 |
64704970 - 64706608 FWD |
279bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12D4 |
TS.chr2.71.024 |
70875110 - 70876486 FWD |
357bp / 2 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5G6 |
SGP.chr2_1222 |
71290716 - 71345873 FWD |
795bp / 7 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
| 1D5 |
SGP.chr2_1315 |
74933598 - 74952344 FWD |
342bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4B5 |
TS.chr2.81.006 |
80212479 - 80222310 REV |
576bp / 6 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5H1 |
SGP.chr2_1446 |
80246416 - 80309443 REV |
573bp / 4 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 4B6 |
TS.chr2.86.010 |
85540461 - 85557023 FWD |
2292bp / 6 |
4 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 6H3 |
SGP.chr2_1919 |
95761118 - 95764742 FWD |
162bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5H2 |
SGP.chr2_1954 |
100123779 - 100159685 FWD |
453bp / 3 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
| 6H4 |
SGP.chr2_1970 |
102125772 - 102131234 REV |
282bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 1D6 |
SGP.chr2_1983 |
102763387 - 102784749 REV |
594bp / 3 |
2 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 9B3 |
SGP.chr2_1995 |
103245721 - 103268438 FWD |
315bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5H3 |
SGP.chr2_2097 |
107390071 - 107561609 FWD |
936bp / 9 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6H5 |
SGP.chr2_2269 |
115681988 - 115688821 REV |
309bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6H6 |
SGP.chr2_2320 |
117232284 - 117238729 FWD |
192bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5H4 |
SGP.chr2_2397 |
120464644 - 120486021 REV |
1524bp / 7 |
5 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
| 12D2 |
TS.chr2.122.010 |
121217222 - 121237909 REV |
1569bp / 14 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 7G5 |
TS.chr2.122.022 |
121584922 - 121590032 FWD |
306bp / 4 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 9C3 |
SGP.chr2_2514 |
125458153 - 125553215 REV |
387bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11B4 |
SGP.chr2_2751 |
137947839 - 137982271 REV |
372bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9D3 |
SGP.chr2_3233 |
161316650 - 161329189 FWD |
363bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 7G6 |
TS.chr2.178.013 |
177923531 - 177936524 FWD |
615bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
|
TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
