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CHROMOSOME 15 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 12D1 |
TS.chr15.22.004 |
21309754 - 21322003 FWD |
318bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7F1 |
TS.chr15.26.022 |
25956967 - 25967930 FWD |
513bp / 4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
| 3G4 |
TS.chr15.35.018 |
34574620 - 34577189 FWD |
1047bp / 3 |
2 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
| 3G5 |
TS.chr15.36.020 |
35890317 - 35898302 FWD |
654bp / 4 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 12F6 |
TS.chr15.46.009 |
45855650 - 45858447 REV |
408bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12E1 |
TS.chr15.49.004 |
48212175 - 48226745 REV |
837bp / 5 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3G6 |
TS.chr15.49.011 |
48880626 - 48889753 REV |
363bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8H1 |
SGP.chr15_469 |
50116650 - 50156502 FWD |
309bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
| 1C1 |
SGP.chr15_483 |
51540486 - 51601294 FWD |
558bp / 5 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12F1 |
TS.chr15.59.026 |
58961546 - 58997112 FWD |
1881bp / 15 |
13 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 7F2 |
TS.chr15.63.015 |
62677698 - 62683883 FWD |
354bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11E2 |
SGP.chr15_672 |
66384938 - 66424740 REV |
720bp / 9 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5E2 |
SGP.chr15_1159 |
90232752 - 90238997 REV |
267bp / 2 |
1 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 7F3 |
TS.chr15.95.012 |
94344144 - 94348984 REV |
1221bp / 2 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
0 |
| 1B6 |
SGP.chr15_1311 |
99484106 - 99502305 FWD |
396bp / 4 |
2 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 12C1 |
TS.chr15.102.007 |
101311270 - 101324193 FWD |
351bp / 4 |
2 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
