RSA-tools - dna-pattern result

Information

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Result

; dna-pattern -v -pl /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161542.pat -format fasta -i /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161542.seq -format fasta -N 4 -noov -D -subst 3
; Input file           	/rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161542.seq
; Input format         	fasta
; Pattern file         	/rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161542.pat
; Search method        	IUPAC
; Allowed substitutions	3
; Patterns to match
; 	seq	id	score
; 	STATAAAWR	STATAAAWR	1
;
PatID Strand Pattern SeqID Start End Matching_word Score
STATAAAWR D STATAAAWR CG12789 4 12 CAATTGAAA 0.67
STATAAAWR D STATAAAWR CG12789 23 31 GCTTAAATT 0.67
STATAAAWR D STATAAAWR CG12789 41 49 ATATTGATA 0.67
STATAAAWR D STATAAAWR CG12789 60 68 CTATGGGAA 0.67
STATAAAWR D STATAAAWR CG12789 74 82 CACTCAATA 0.67
STATAAAWR D STATAAAWR CG12789 110 118 GTATTCAAT 0.67
STATAAAWR D STATAAAWR CG12789 141 149 CCATACTTA 0.67
STATAAAWR D STATAAAWR CG12789 173 181 CTGTTAATA 0.78
STATAAAWR D STATAAAWR CG12789 210 218 CTTTAACTA 0.78
STATAAAWR D STATAAAWR CG12789 224 232 GCCTGAAAG 0.67
STATAAAWR D STATAAAWR CG12789 251 259 GTTCACAAA 0.67
STATAAAWR D STATAAAWR CG12789 268 276 GTGTAAAGT 0.67
STATAAAWR D STATAAAWR CG12789 281 289 TTTTAAATT 0.67
STATAAAWR D STATAAAWR CG12789 293 301 GTATTATGA 0.67
STATAAAWR D STATAAAWR CG12789 318 326 TTATAATAG 0.78
STATAAAWR D STATAAAWR CG12789 332 340 TTATCAGTA 0.67
STATAAAWR D STATAAAWR CG12789 356 364 CTACATTTA 0.67
STATAAAWR D STATAAAWR CG12789 387 395 TTTTATATG 0.67
STATAAAWR D STATAAAWR CG12789 408 416 CTATCAATT 0.78
STATAAAWR D STATAAAWR CG12789 434 442 GTTTCAATG 0.78
STATAAAWR D STATAAAWR CG12789 449 457 ATATCATTA 0.67
STATAAAWR D STATAAAWR CG12789 471 479 GTATCCACA 0.67
STATAAAWR D STATAAAWR CG3376 1 9 GATTAAAAT 0.67
STATAAAWR D STATAAAWR CG3376 19 27 CTCCTAAAG 0.67
STATAAAWR D STATAAAWR CG3376 34 42 ATATACCTA 0.67
STATAAAWR D STATAAAWR CG3376 44 52 TCTTAAATA 0.67
STATAAAWR D STATAAAWR CG3376 59 67 CTCTAGAAA 0.78
STATAAAWR D STATAAAWR CG3376 77 85 CTTTATGTG 0.67
STATAAAWR D STATAAAWR CG3376 107 115 CTATCTTTG 0.67
STATAAAWR D STATAAAWR CG3376 120 128 TTCTAAGAA 0.67
STATAAAWR D STATAAAWR CG3376 130 138 GTAGTAATT 0.67
STATAAAWR D STATAAAWR CG3376 147 155 GAATTAATT 0.67
STATAAAWR D STATAAAWR CG3376 167 175 CTTAAAATT 0.67
STATAAAWR D STATAAAWR CG3376 183 191 GCCAAAAAA 0.67
STATAAAWR D STATAAAWR CG3376 277 285 GTATCATAT 0.67
STATAAAWR D STATAAAWR CG3376 303 311 GGAACAATG 0.67
STATAAAWR D STATAAAWR CG3376 336 344 GGCTGAAAG 0.67
STATAAAWR D STATAAAWR CG3376 457 465 GACTCAAAG 0.67
STATAAAWR D STATAAAWR CG3534 6 14 TTATACCAA 0.67
STATAAAWR D STATAAAWR CG3534 45 53 TTTTGAATA 0.67
STATAAAWR D STATAAAWR CG3534 61 69 GTCTAGAAA 0.78
STATAAAWR D STATAAAWR CG3534 86 94 TTTTTAAAA 0.67
STATAAAWR D STATAAAWR CG3534 99 107 TTATTATAA 0.67
STATAAAWR D STATAAAWR CG3534 113 121 CTTCTAAAG 0.67
STATAAAWR D STATAAAWR CG3534 130 138 TTCTACATA 0.67
STATAAAWR D STATAAAWR CG3534 150 158 CGATATTTG 0.67
STATAAAWR D STATAAAWR CG3534 173 181 CTGTTAATA 0.78
STATAAAWR D STATAAAWR CG3534 202 210 CCTTGAAAA 0.67
STATAAAWR D STATAAAWR CG3534 216 224 CTTTAATGA 0.67
STATAAAWR D STATAAAWR CG3534 238 246 GCATTAATC 0.67
PatID Strand Pattern SeqID Start End Matching_word Score
STATAAAWR D STATAAAWR CG3534 281 289 TTTTAACAG 0.67
STATAAAWR D STATAAAWR CG3534 309 317 ATTTGAAAA 0.67
STATAAAWR D STATAAAWR CG3534 324 332 CAACGAAAA 0.67
STATAAAWR D STATAAAWR CG3534 369 377 CACTAACAA 0.67
STATAAAWR D STATAAAWR CG3534 381 389 AAATAATTG 0.67
STATAAAWR D STATAAAWR CG3534 397 405 GTCAACAAA 0.67
STATAAAWR D STATAAAWR CG3534 430 438 GTATTAAAG 0.89
STATAAAWR D STATAAAWR CG3534 473 481 GTTTAATTT 0.67
STATAAAWR D STATAAAWR CG7816 8 16 CAATTAATT 0.67
STATAAAWR D STATAAAWR CG7816 27 35 CTCGAACAA 0.67
STATAAAWR D STATAAAWR CG7816 45 53 GCAAATATA 0.67
STATAAAWR D STATAAAWR CG7816 62 70 ATTTAAGTA 0.67
STATAAAWR D STATAAAWR CG7816 77 85 TTTTAGATA 0.67
STATAAAWR D STATAAAWR CG7816 88 96 GTCTACCAG 0.67
STATAAAWR D STATAAAWR CG7816 111 119 GGGTAACAA 0.67
STATAAAWR D STATAAAWR CG7816 213 221 GTTTGATTG 0.67
STATAAAWR D STATAAAWR CG7816 233 241 CTATGAAGC 0.67
STATAAAWR D STATAAAWR CG7816 263 271 CCATGATTA 0.67
STATAAAWR D STATAAAWR CG7816 362 370 CCATATCTA 0.67
STATAAAWR D STATAAAWR CG7816 464 472 GCTTAACTG 0.67
STATAAAWR D STATAAAWR CG7816 474 482 CTATTTGTA 0.67
STATAAAWR D STATAAAWR Hrb87F 6 14 GTTTAAACT 0.67
STATAAAWR D STATAAAWR Hrb87F 35 43 CTGCAGAAG 0.67
STATAAAWR D STATAAAWR Hrb87F 50 58 CTTGGAAAA 0.67
STATAAAWR D STATAAAWR Hrb87F 93 101 GATTACATG 0.67
STATAAAWR D STATAAAWR Hrb87F 114 122 CTACTAATC 0.67
STATAAAWR D STATAAAWR Hrb87F 127 135 CTAGAACTA 0.78
STATAAAWR D STATAAAWR Hrb87F 147 155 TTAGTAAAA 0.67
STATAAAWR D STATAAAWR Hrb87F 179 187 GCATGCATG 0.67
STATAAAWR D STATAAAWR Hrb87F 190 198 GTGTATCAG 0.67
STATAAAWR D STATAAAWR Hrb87F 250 258 CCACAGAAA 0.67
STATAAAWR D STATAAAWR Hrb87F 260 268 CAATACAAG 0.78
STATAAAWR D STATAAAWR Hrb87F 334 342 CTACGACTA 0.67
STATAAAWR D STATAAAWR Hrb87F 404 412 GTGGACATG 0.67
STATAAAWR D STATAAAWR Hrb87F 473 481 GTCTCACTG 0.67
STATAAAWR D STATAAAWR grk 1 9 AAATGAATA 0.67
STATAAAWR D STATAAAWR grk 16 24 TTTTAATTA 0.67
STATAAAWR D STATAAAWR grk 75 83 TTTTAAATT 0.67
STATAAAWR D STATAAAWR grk 86 94 GAATATCTG 0.67
STATAAAWR D STATAAAWR grk 103 111 CTTTTAAAT 0.67
STATAAAWR D STATAAAWR grk 116 124 TTATCAATA 0.78
STATAAAWR D STATAAAWR grk 126 134 AAATAATAA 0.67
STATAAAWR D STATAAAWR grk 138 146 CTACAATTG 0.78
STATAAAWR D STATAAAWR grk 154 162 GTACGAAAC 0.67
STATAAAWR D STATAAAWR grk 165 173 GTAAACATT 0.67
STATAAAWR D STATAAAWR grk 221 229 CCCTAGAAG 0.67
STATAAAWR D STATAAAWR grk 234 242 CAGTGAAAA 0.67
STATAAAWR D STATAAAWR grk 247 255 CGTTAACAA 0.67
STATAAAWR D STATAAAWR grk 259 267 GAATAACTG 0.78
STATAAAWR D STATAAAWR grk 300 308 ATATCCATA 0.67
PatID Strand Pattern SeqID Start End Matching_word Score
STATAAAWR D STATAAAWR grk 320 328 CTATTATCG 0.67
STATAAAWR D STATAAAWR grk 418 426 GTAGGGATG 0.67
;
; Job started	2001_09_14.161543
; Job done   	2001_09_14.161543

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