RSA-tools - dna-pattern result

Information

One or several button(s) will appear at the bottom of this page, allowing you to send the result as input for a subsequent query.

Result

; dna-pattern -v -pl /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161740.pat -format fasta -i /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161740.seq -format fasta -N 4 -noov -D -subst 2
; Input file           	/rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161740.seq
; Input format         	fasta
; Pattern file         	/rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161740.pat
; Search method        	IUPAC
; Allowed substitutions	2
; Patterns to match
; 	seq	id	score
; 	STATAAAWR	STATAAAWR	1
;
PatID Strand Pattern SeqID Start End Matching_word Score
STATAAAWR D STATAAAWR CG12789 45 53 TGATAAAAA 0.78
STATAAAWR D STATAAAWR CG12789 78 86 CAATAAAAT 0.78
STATAAAWR D STATAAAWR CG12789 149 157 ATATTAATA 0.78
STATAAAWR D STATAAAWR CG12789 173 181 CTGTTAATA 0.78
STATAAAWR D STATAAAWR CG12789 210 218 CTTTAACTA 0.78
STATAAAWR D STATAAAWR CG12789 318 326 TTATAATAG 0.78
STATAAAWR D STATAAAWR CG12789 408 416 CTATCAATT 0.78
STATAAAWR D STATAAAWR CG12789 434 442 GTTTCAATG 0.78
STATAAAWR D STATAAAWR CG3376 59 67 CTCTAGAAA 0.78
STATAAAWR D STATAAAWR CG3376 184 192 CCAAAAAAA 0.78
STATAAAWR D STATAAAWR CG3534 61 69 GTCTAGAAA 0.78
STATAAAWR D STATAAAWR CG3534 102 110 TTATAAAGA 0.78
STATAAAWR D STATAAAWR CG3534 132 140 CTACATATA 0.78
STATAAAWR D STATAAAWR CG3534 173 181 CTGTTAATA 0.78
STATAAAWR D STATAAAWR CG3534 203 211 CTTGAAAAG 0.78
STATAAAWR D STATAAAWR CG3534 399 407 CAACAAAAG 0.78
STATAAAWR D STATAAAWR CG3534 430 438 GTATTAAAG 0.89
STATAAAWR D STATAAAWR CG7816 480 488 GTATCAAAA 0.89
STATAAAWR D STATAAAWR Hrb87F 127 135 CTAGAACTA 0.78
STATAAAWR D STATAAAWR Hrb87F 192 200 GTATCAGTG 0.78
STATAAAWR D STATAAAWR Hrb87F 260 268 CAATACAAG 0.78
STATAAAWR D STATAAAWR grk 116 124 TTATCAATA 0.78
STATAAAWR D STATAAAWR grk 138 146 CTACAATTG 0.78
STATAAAWR D STATAAAWR grk 223 231 CTAGAAGTA 0.78
STATAAAWR D STATAAAWR grk 259 267 GAATAACTG 0.78
;
; Job started	2001_09_14.161741
; Job done   	2001_09_14.161742

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