Information
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COMMAND LINE: /rubens/dsk4/jvanheld/rsa-tools/bin/patser -A a:t c:g -m /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.160709.matrix -f /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.160709.seq.wconsensus -ls 0 -M 0
File containing the matrix: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.160709.matrix
File containing the sequence information: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.160709.seq.wconsensus
Type of matrix: alignment
Total pseudo-counts added to the elements of the alignment matrix: 1
Range for approximating a weight matrix with integers: 10000
Minimum score for calculating p-values: 0
Treat unrecognized symbols as discontinuities in the sequence.
Print scores greater than or equal to 0.00
***** Information for the alphabet from the command line. *****
letter 1: A (complement: T) prior frequency = 0.250000
letter 2: C (complement: G) prior frequency = 0.250000
letter 3: G (complement: C) prior frequency = 0.250000
letter 4: T (complement: A) prior frequency = 0.250000
width of the alignment matrix: 15
A | 61 16 352 3 354 268 360 222 155 56 83 82 82 68 77
C | 145 46 0 10 0 0 3 2 44 135 147 127 118 107 101
G | 152 18 2 2 5 0 20 44 157 150 128 128 128 139 140
T | 31 309 35 374 30 121 6 121 33 48 31 52 61 75 71
Information content (base e): 6.991
Sample size adjusted information content
(information content minus the average information
expected from an arbitrary alignment of random sequences): 6.933
Information content after adding pseudo-counts: 6.936
maximum score: 11.254
minimum score: -36.443
range of scores: 11.254 - -36.443 = 47.697
minimum score for calculating p-values: 0.000
maximum ln(numerically calculated p-value): -4.195
minimum ln(numerically calculated p-value): -20.794
ln(cutoff p-value) based on sample size adjusted information content: -6.933
numerically calculated cutoff score: 4.785
ln(numerically calculated cutoff p-value): -6.934
average score above numerically calculated cutoff: 5.970
CG12789 position= 23 score= 1.83 ln(p-value)= -5.10
CG12789 position= 45 score= 4.42 ln(p-value)= -6.67
CG12789 position= 47 score= 3.46 ln(p-value)= -6.04
CG12789 position= 78 score= 5.55 ln(p-value)= -7.51
CG12789 position= 147 score= 1.59 ln(p-value)= -4.97
CG12789 position= 149 score= 4.05 ln(p-value)= -6.42
CG12789 position= 173 score= 0.12 ln(p-value)= -4.25
CG12789 position= 210 score= 2.44 ln(p-value)= -5.43
CG12789 position= 280 score= 0.01 ln(p-value)= -4.20
CG12789 position= 281 score= 0.57 ln(p-value)= -4.46
CG12789 position= 316 score= 1.70 ln(p-value)= -5.03
CG12789 position= 318 score= 2.24 ln(p-value)= -5.32
CG12789 position= 358 score= 0.89 ln(p-value)= -4.61
CG12789 position= 385 score= 1.26 ln(p-value)= -4.80
CG12789 position= 387 score= 2.42 ln(p-value)= -5.43
CG12789 position= 389 score= 1.94 ln(p-value)= -5.16
CG3376 position= 1 score= 2.95 ln(p-value)= -5.73
CG3376 position= 2 score= 0.50 ln(p-value)= -4.43
CG3376 position= 61 score= 2.52 ln(p-value)= -5.48
CG3376 position= 77 score= 0.95 ln(p-value)= -4.65
CG3376 position= 147 score= 0.19 ln(p-value)= -4.28
CG3376 position= 166 score= 1.93 ln(p-value)= -5.15
CG3376 position= 184 score= 2.14 ln(p-value)= -5.27
CG3376 position= 185 score= 0.21 ln(p-value)= -4.29
CG3376 position= 216 score= 1.21 ln(p-value)= -4.78
CG3376 position= 376 score= 0.05 ln(p-value)= -4.22
CG3376 position= 429 score= 0.72 ln(p-value)= -4.53
CG3376 position= 430 score= 3.21 ln(p-value)= -5.89
CG3376 position= 431 score= 0.73 ln(p-value)= -4.54
CG3534 position= 63 score= 2.34 ln(p-value)= -5.38
CG3534 position= 85 score= 0.19 ln(p-value)= -4.28
CG3534 position= 86 score= 0.31 ln(p-value)= -4.34
CG3534 position= 87 score= 0.57 ln(p-value)= -4.46
CG3534 position= 99 score= 0.54 ln(p-value)= -4.45
CG3534 position= 100 score= 1.66 ln(p-value)= -5.01
CG3534 position= 102 score= 5.78 ln(p-value)= -7.71
CG3534 position= 132 score= 3.78 ln(p-value)= -6.24
CG3534 position= 150 score= 0.68 ln(p-value)= -4.51
CG3534 position= 202 score= 0.52 ln(p-value)= -4.44
CG3534 position= 203 score= 0.65 ln(p-value)= -4.50
CG3534 position= 307 score= 0.34 ln(p-value)= -4.35
CG3534 position= 309 score= 3.41 ln(p-value)= -6.01
CG3534 position= 310 score= 1.42 ln(p-value)= -4.88
CG3534 position= 399 score= 2.99 ln(p-value)= -5.76
CG3534 position= 430 score= 7.95 ln(p-value)= -9.80
CG3534 position= 473 score= 1.23 ln(p-value)= -4.79
CG7816 position= 37 score= 0.07 ln(p-value)= -4.23
CG7816 position= 47 score= 1.01 ln(p-value)= -4.68
CG7816 position= 49 score= 3.31 ln(p-value)= -5.95
CG7816 position= 51 score= 1.26 ln(p-value)= -4.80
CG7816 position= 60 score= 2.10 ln(p-value)= -5.25
CG7816 position= 62 score= 2.68 ln(p-value)= -5.58
CG7816 position= 79 score= 0.41 ln(p-value)= -4.39
CG7816 position= 81 score= 1.31 ln(p-value)= -4.83
CG7816 position= 150 score= 0.73 ln(p-value)= -4.54
CG7816 position= 233 score= 1.68 ln(p-value)= -5.02
CG7816 position= 253 score= 0.04 ln(p-value)= -4.21
CG7816 position= 362 score= 0.24 ln(p-value)= -4.31
CG7816 position= 398 score= 0.81 ln(p-value)= -4.58
CG7816 position= 474 score= 1.12 ln(p-value)= -4.73
Hrb87F position= 114 score= 1.34 ln(p-value)= -4.84
Hrb87F position= 138 score= 0.50 ln(p-value)= -4.43
Hrb87F position= 147 score= 0.18 ln(p-value)= -4.28
Hrb87F position= 394 score= 0.58 ln(p-value)= -4.47
grk position= 1 score= 0.15 ln(p-value)= -4.26
grk position= 14 score= 0.15 ln(p-value)= -4.26
grk position= 16 score= 0.41 ln(p-value)= -4.38
grk position= 75 score= 0.69 ln(p-value)= -4.52
grk position= 82 score= 0.18 ln(p-value)= -4.28
grk position= 103 score= 0.69 ln(p-value)= -4.52
grk position= 104 score= 0.81 ln(p-value)= -4.58
grk position= 120 score= 3.25 ln(p-value)= -5.92
grk position= 122 score= 5.36 ln(p-value)= -7.37
grk position= 124 score= 0.39 ln(p-value)= -4.38
grk position= 126 score= 0.90 ln(p-value)= -4.62
grk position= 146 score= 0.88 ln(p-value)= -4.61
grk position= 148 score= 1.42 ln(p-value)= -4.88
grk position= 171 score= 0.62 ln(p-value)= -4.49
grk position= 211 score= 3.64 ln(p-value)= -6.16
grk position= 223 score= 0.19 ln(p-value)= -4.28
grk position= 265 score= 2.87 ln(p-value)= -5.68
grk position= 266 score= 1.63 ln(p-value)= -4.99
grk position= 304 score= 1.05 ln(p-value)= -4.69