RSA-tools - dna-pattern result
Information
One or several button(s) will appear at the bottom of this page, allowing you to send the result as input for a subsequent query.
Result
; dna-pattern -v -pl /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161822.pat -format fasta -i /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161822.seq -format fasta -N 4 -noov -D -subst 1
; Input file /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161822.seq
; Input format fasta
; Pattern file /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/dna-pattern.2001_09_14.161822.pat
; Search method IUPAC
; Allowed substitutions 1
; Patterns to match
; seq id score
; STATAAAWR STATAAAWR 1
;
| PatID | Strand | Pattern | SeqID | Start | End | Matching_word | Score |
| STATAAAWR | D | STATAAAWR | CG3376 | 61 | 69 | CTAGAAATA | 0.89 |
| STATAAAWR | D | STATAAAWR | CG3534 | 63 | 71 | CTAGAAATG | 0.89 |
| STATAAAWR | D | STATAAAWR | CG3534 | 430 | 438 | GTATTAAAG | 0.89 |
| STATAAAWR | D | STATAAAWR | CG7816 | 480 | 488 | GTATCAAAA | 0.89 |
| STATAAAWR | D | STATAAAWR | grk | 122 | 130 | ATATAAATA | 0.89 |
;
; Job started 2001_09_14.161823
; Job done 2001_09_14.161823